Analysis and presentation of cumulative antimicrobial susceptibility test data

  • \(\bf Introduction\) Many clinical microbiology laboratories report on cumulative antimicrobial susceptibility testing (cAST) data on a regular basis. Criteria for generation of cAST reports, however, are often obscure and inconsistent. Whereas the CLSI has published a guideline for analysis and presentation of cAST data, national guidelines directed at clinical microbiology laboratories are not available in Europe. Thus, we sought to describe the influence of different parameters in the process of cAST data analysis in the setting of a German routine clinical microbiology laboratory during 2 consecutive years. \(\textbf {Material and Methods}\) We developed various program scripts to assess the consequences ensuing from different algorithms for calculation of cumulative antibiograms from the data collected in our clinical microbiology laboratory in 2013 and 2014. \(\bf Results\) One of the most pronounced effects was caused by exclusion of screening cultures for multi-drug resistant organisms which decreased the MRSA rate in some cases to one third. Dependent on the handling of duplicate isolates, i.e. isolates of the same species recovered from successive cultures on the same patient during the time period analyzed, we recorded differences in resistance rates of up to 5 percentage points for \(\textit {S. aureus, E.coli}\) and \(\textit {K. pneumoniae}\) and up to 10 percentage points for \(\textit {P. aeruginosa.}\) Stratification by site of care and specimen type, testing of antimicrobials selectively on resistant isolates, change of interpretation rules and analysis at genus level instead of species level resulted in further changes of calculated antimicrobial resistance rates. \(\bf Conclusion\) The choice of parameters for cAST data analysis may have a substantial influence on calculated antimicrobial resistance rates. Consequently, comparability of cAST reports from different clinical microbiology laboratories may be limited. We suggest that laboratories communicate the strategy used for cAST data analysis as long as national guidelines for standardized cAST data analysis and reporting do not exist in Europe.

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Metadaten
Author:Rebekka KohlmannGND, Sören GatermannGND
URN:urn:nbn:de:hbz:294-58008
DOI:https://doi.org/10.1371/journal.pone.0147965
Parent Title (English):PLoS one
Subtitle (English):the influence of different parameters in a routine clinical microbiology laboratory
Document Type:Article
Language:English
Date of Publication (online):2018/06/28
Date of first Publication:2016/01/27
Publishing Institution:Ruhr-Universität Bochum, Universitätsbibliothek
Tag:Open Access Fonds
Volume:11
Issue:1
First Page:e0147965-1
Last Page:e0147965-19
Note:
Article Processing Charge funded by the Open Access Publication Fund of Ruhr-Universität Bochum.
Note:
PLoS ONE,  Bd. 11.2016, H. 1, Artikelnummer e0147965
Institutes/Facilities:Institut für Hygiene und Mikrobiologie, Abteilung für Medizinische Mikrobiologie
Dewey Decimal Classification:Technik, Medizin, angewandte Wissenschaften / Medizin, Gesundheit
open_access (DINI-Set):open_access
faculties:Medizinische Fakultät
Licence (English):License LogoCreative Commons - CC BY 4.0 - Attribution 4.0 International